restrictfromsize
restrictfromsize filters sequences and transcripts by user-specified size thresholds to enable precise selection of sequence datasets for downstream genomic analyses.
Key Features:
- Size-Based Filtering: Selects elements from a list of sequences or transcripts based on user-specified size thresholds.
- Galaxy Integration: Runs within the Galaxy framework to integrate with Galaxy-based workflows.
- API/Bioblend Support: Interacts with Galaxy through the Galaxy API or the Bioblend library for programmatic workflow integration.
Scientific Applications:
- Genomic Research: Filters sequences for downstream analyses such as metagenomics and phylogenetics.
Methodology:
Executes within the Galaxy execution engine. Communicates with Galaxy via the Galaxy API or the Bioblend library.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Filtering
Inputs
Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.