restrictfromsize
restrictfromsize filters sequences and transcripts by user-specified size thresholds to enable precise selection of sequence datasets for downstream genomic analyses.
Key Features:
- Size-Based Filtering: Selects elements from a list of sequences or transcripts based on user-specified size thresholds.
- Galaxy Integration: Runs within the Galaxy framework to integrate with Galaxy-based workflows.
- API/Bioblend Support: Interacts with Galaxy through the Galaxy API or the Bioblend library for programmatic workflow integration.
Scientific Applications:
- Genomic Research: Filters sequences for downstream analyses such as metagenomics and phylogenetics.
Methodology:
Executes within the Galaxy execution engine. Communicates with Galaxy via the Galaxy API or the Bioblend library.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Filtering
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.