ReviewR

ReviewR enables manual record review and chart abstraction of electronic health record (EHR) data for research by providing a unified R Shiny environment that supports OMOP and MIMIC-III data models and integrates with REDCap via its API.


Key Features:

  • Unified review and abstraction environment: Consolidates EHR record review and chart abstraction data entry within one R Shiny-based platform.
  • Support for multiple data models: Provides compatibility with OMOP (Observational Medical Outcomes Partnership) and MIMIC-III (Medical Information Mart for Intensive Care) data models.
  • REDCap API integration: Connects to Research Electronic Data Capture (REDCap) via its API to store abstraction results.
  • Modular architecture: Implements a modular design to permit customization and expansion of components.
  • Compatibility with clinical data warehouses: Interfaces with diverse database systems and data models used in clinical data warehouses.

Scientific Applications:

  • Manual EHR record review: Supports systematic manual review of EHRs for research and data curation tasks.
  • Chart abstraction and data capture: Enables extraction and structured capture of clinical variables into REDCap.
  • Cross-model data exploration: Facilitates exploration and comparison of patient data across OMOP and MIMIC-III frameworks.
  • Data validation and accuracy verification: Assists in verifying the accuracy of EHR-derived datasets within clinical data warehouses.

Methodology:

Implemented as an R Shiny application with modular architecture, supporting OMOP and MIMIC-III data models and integrating with the REDCap API; deployable on a single machine or scaled for multiple concurrent users.

Topics

Details

License:
BSD-3-Clause
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Windows, Linux
Programming Languages:
R
Added:
3/29/2022
Last Updated:
3/29/2022

Operations

Data Inputs & Outputs

Publications

Mayer DA, Rasmussen LV, Roark CD, Kahn MG, Schilling LM, Wiley LK. ReviewR: A light-weight and extensible tool for manual review of clinical records. Unknown Journal. 2021. doi:10.1101/2021.10.25.21265151.

Documentation

Links