ReviewR
ReviewR enables manual record review and chart abstraction of electronic health record (EHR) data for research by providing a unified R Shiny environment that supports OMOP and MIMIC-III data models and integrates with REDCap via its API.
Key Features:
- Unified review and abstraction environment: Consolidates EHR record review and chart abstraction data entry within one R Shiny-based platform.
- Support for multiple data models: Provides compatibility with OMOP (Observational Medical Outcomes Partnership) and MIMIC-III (Medical Information Mart for Intensive Care) data models.
- REDCap API integration: Connects to Research Electronic Data Capture (REDCap) via its API to store abstraction results.
- Modular architecture: Implements a modular design to permit customization and expansion of components.
- Compatibility with clinical data warehouses: Interfaces with diverse database systems and data models used in clinical data warehouses.
Scientific Applications:
- Manual EHR record review: Supports systematic manual review of EHRs for research and data curation tasks.
- Chart abstraction and data capture: Enables extraction and structured capture of clinical variables into REDCap.
- Cross-model data exploration: Facilitates exploration and comparison of patient data across OMOP and MIMIC-III frameworks.
- Data validation and accuracy verification: Assists in verifying the accuracy of EHR-derived datasets within clinical data warehouses.
Methodology:
Implemented as an R Shiny application with modular architecture, supporting OMOP and MIMIC-III data models and integrating with the REDCap API; deployable on a single machine or scaled for multiple concurrent users.
Topics
Details
- License:
- BSD-3-Clause
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Windows, Linux
- Programming Languages:
- R
- Added:
- 3/29/2022
- Last Updated:
- 3/29/2022
Operations
Data Inputs & Outputs
Data retrieval
Publications
Mayer DA, Rasmussen LV, Roark CD, Kahn MG, Schilling LM, Wiley LK. ReviewR: A light-weight and extensible tool for manual review of clinical records. Unknown Journal. 2021. doi:10.1101/2021.10.25.21265151.
Documentation
User manual', 'General
https://cran.r-project.org/web/packages/ReviewR/ReviewR.pdf