RevUP
RevUP computes an RVE-score by integrating public databases and user-provided data to evaluate regulatory variants using a 24-criteria framework that quantifies functional, population, and genetic evidence for disease involvement.
Key Features:
- Hybrid Data Integration: Integrates public databases and user-provided data to support variant evaluation.
- 24-Criteria Framework: Applies a 24-criteria scoring scheme that assesses functional, population, and disease-related dimensions of regulatory variants.
Scientific Applications:
- Rare Disease Research: Prioritizes regulatory variants for investigation in rare disease studies using RVE-scores.
- Disease Mechanism Elucidation: Assesses the potential roles of regulatory variants in rare disease pathogenesis by quantifying diverse evidence types.
- Collaborative Research: Provides a standardized scoring metric (RVE-score) to harmonize variant interpretation across studies.
Methodology:
RevUP integrates public databases and user-provided data and applies a 24-criteria scoring framework that combines functional, population, and genetic evidence to compute the RVE-score.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript, Python
- Added:
- 7/4/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Correard S, Hewitson B, van der Lee R, Wasserman WW. RevUP: an online scoring system for regulatory variants implicated in rare diseases. Bioinformatics. 2022;38(9):2664-2666. doi:10.1093/bioinformatics/btac157. PMID:35289834. PMCID:PMC9048665.
PMID: 35289834
PMCID: PMC9048665
Funding: - Natural Sciences and Engineering Research Council of Canada Discovery Grant: RGPIN-2017-06824
- BC Children’s Hospital Foundation & Research Institute: KRZ48027
- Rubicon fellowship from the Netherlands Organization for Scientific Research [NWO: 452172015
Links
Repository
https://github.com/wassermanlab/revup