RevUP

RevUP computes an RVE-score by integrating public databases and user-provided data to evaluate regulatory variants using a 24-criteria framework that quantifies functional, population, and genetic evidence for disease involvement.


Key Features:

  • Hybrid Data Integration: Integrates public databases and user-provided data to support variant evaluation.
  • 24-Criteria Framework: Applies a 24-criteria scoring scheme that assesses functional, population, and disease-related dimensions of regulatory variants.

Scientific Applications:

  • Rare Disease Research: Prioritizes regulatory variants for investigation in rare disease studies using RVE-scores.
  • Disease Mechanism Elucidation: Assesses the potential roles of regulatory variants in rare disease pathogenesis by quantifying diverse evidence types.
  • Collaborative Research: Provides a standardized scoring metric (RVE-score) to harmonize variant interpretation across studies.

Methodology:

RevUP integrates public databases and user-provided data and applies a 24-criteria scoring framework that combines functional, population, and genetic evidence to compute the RVE-score.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
JavaScript, Python
Added:
7/4/2022
Last Updated:
11/24/2024

Operations

Publications

Correard S, Hewitson B, van der Lee R, Wasserman WW. RevUP: an online scoring system for regulatory variants implicated in rare diseases. Bioinformatics. 2022;38(9):2664-2666. doi:10.1093/bioinformatics/btac157. PMID:35289834. PMCID:PMC9048665.

PMID: 35289834
PMCID: PMC9048665
Funding: - Natural Sciences and Engineering Research Council of Canada Discovery Grant: RGPIN-2017-06824 - BC Children’s Hospital Foundation & Research Institute: KRZ48027 - Rubicon fellowship from the Netherlands Organization for Scientific Research [NWO: 452172015

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