RFCCA

RFCCA estimates conditional canonical correlations between two sets of variables while accounting for subject-related covariates such as age, gender, or clinical measures.


Key Features:

  • R library implementation: Implemented as an R library for estimation of conditional canonical correlations.
  • Conditional canonical correlation estimation: Extends canonical correlation analysis (CCA) by incorporating subject-related covariates to estimate canonical correlations conditional on those covariates.
  • Random forest framework: Employs a random forest approach that builds individual trees using a specialized splitting rule designed to maximize canonical correlation heterogeneity between child nodes.
  • Significance testing: Provides a significance test to assess the global effect of covariates on the relationship between the two variable sets.
  • Simulation validation: Performance and the significance test were evaluated via simulation studies showing accurate canonical correlation estimation with well-controlled Type-1 error rates.
  • Practical application: Demonstrated on EEG data to illustrate extraction of conditional multivariate relationships in complex datasets.

Scientific Applications:

  • Neuroscience (EEG analysis): Quantifies conditional relationships between neural measures and other variable sets in EEG studies.
  • Clinical research: Assesses multivariate associations conditional on clinical covariates in clinical and biomedical studies.
  • Multivariate data analysis: Applies to any domain requiring estimation of conditional relationships between two variable sets while accounting for subject-specific covariates.

Methodology:

Extends CCA by incorporating covariates, uses a random forest approach with a specialized splitting rule that maximizes canonical correlation heterogeneity between child nodes, includes a significance test for the global effect of covariates, and was validated through simulation studies.

Topics

Details

License:
GPL-3.0
Tool Type:
library
Programming Languages:
R, C
Added:
9/20/2021
Last Updated:
9/20/2021

Operations

Publications

Alakuş C, Larocque D, Jacquemont S, Barlaam F, Martin C, Agbogba K, Lippé S, Labbe A. Conditional canonical correlation estimation based on covariates with random forests. Bioinformatics. 2021;37(17):2714-2721. doi:10.1093/bioinformatics/btab158. PMID:33693547.

Documentation

Links