RFPR-IDP

RFPR-IDP predicts intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs), reducing misclassification of fully ordered proteins to improve disorder annotation accuracy.


Key Features:

  • Training Strategy: Incorporates both fully ordered and disordered proteins in training to reduce false positives.
  • Machine Learning Architecture: Combines convolutional neural networks (CNN) with bidirectional long short-term memory (BiLSTM) to distinguish ordered and disordered proteins.
  • Performance: Outperforms 10 state-of-the-art methods in scenarios with mixed ordered and disordered protein datasets.

Scientific Applications:

  • Protein Function Analysis: Enables accurate prediction of IDPs/IDRs for biological research and computational biology.

Methodology:

Trains on balanced datasets of ordered and disordered proteins using CNN-BiLSTM architectures to improve classification accuracy.

Topics

Details

Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Liu Y, Wang X, Liu B. RFPR-IDP: reduce the false positive rates for intrinsically disordered protein and region prediction by incorporating both fully ordered proteins and disordered proteins. Briefings in Bioinformatics. 2020;22(2):2000-2011. doi:10.1093/bib/bbaa018. PMID:32112084. PMCID:PMC7986600.

PMID: 32112084
PMCID: PMC7986600
Funding: - National Natural Science Foundation of China: 61573118, 61672184, 61732012, 61822306 - Beijing Natural Science Foundation: JQ19019 - Fok Ying-Tung Education Foundation for Young Teachers in the Higher Education Institutions of China: 161063 - Scientific Research Foundation in Shenzhen: JCYJ20170307150528934, JCYJ20170811153836555, JCYJ20180306172207178