RFPR-IDP
RFPR-IDP predicts intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs), reducing misclassification of fully ordered proteins to improve disorder annotation accuracy.
Key Features:
- Training Strategy: Incorporates both fully ordered and disordered proteins in training to reduce false positives.
- Machine Learning Architecture: Combines convolutional neural networks (CNN) with bidirectional long short-term memory (BiLSTM) to distinguish ordered and disordered proteins.
- Performance: Outperforms 10 state-of-the-art methods in scenarios with mixed ordered and disordered protein datasets.
Scientific Applications:
- Protein Function Analysis: Enables accurate prediction of IDPs/IDRs for biological research and computational biology.
Methodology:
Trains on balanced datasets of ordered and disordered proteins using CNN-BiLSTM architectures to improve classification accuracy.
Topics
Details
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Liu Y, Wang X, Liu B. RFPR-IDP: reduce the false positive rates for intrinsically disordered protein and region prediction by incorporating both fully ordered proteins and disordered proteins. Briefings in Bioinformatics. 2020;22(2):2000-2011. doi:10.1093/bib/bbaa018. PMID:32112084. PMCID:PMC7986600.
DOI: 10.1093/bib/bbaa018
PMID: 32112084
PMCID: PMC7986600
Funding: - National Natural Science Foundation of China: 61573118, 61672184, 61732012, 61822306
- Beijing Natural Science Foundation: JQ19019
- Fok Ying-Tung Education Foundation for Young Teachers in the Higher Education Institutions of China: 161063
- Scientific Research Foundation in Shenzhen: JCYJ20170307150528934, JCYJ20170811153836555, JCYJ20180306172207178