rna-tools.online
rna-tools.online provides integrated RNA 3D structural bioinformatics operations for sequence analysis, structure manipulation, simulation, minimization, quality assessment, and structural comparison within RNA modeling workflows.
Key Features:
- Comprehensive RNA 3D Analysis Suite: Supports over 100 operations including RNA sequence analysis, structural editing, energy minimization, simulation, model quality assessment, and structural comparison.
- Model Evaluation and Benchmarking: Implements analyses aligned with RNA-Puzzles community standards for RNA 3D structure prediction and validation.
Scientific Applications:
- RNA Structural Modeling: Facilitates prediction, refinement, validation, and comparative analysis of RNA 3D structures for functional and interaction studies.
Methodology:
rna-tools.online integrates established RNA 3D structural prediction, refinement, and evaluation algorithms into a unified computational framework supporting end-to-end RNA modeling workflows.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, JavaScript
- Added:
- 8/17/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Magnus M. rna-tools.online: a Swiss army knife for RNA 3D structure modeling workflow. Nucleic Acids Research. 2022;50(W1):W657-W662. doi:10.1093/nar/gkac372. PMID:35580057. PMCID:PMC9252763.
DOI: 10.1093/nar/gkac372
PMID: 35580057
PMCID: PMC9252763
Funding: - Regenerative Mechanisms for Health-ReMedy: MAB/2017/2
Links
Repository
https://github.com/mmagnus/rna-tools/