RNAbrowse

RNAbrowse manages, queries, and visualizes RNA-Seq de novo transcriptome analysis results using a biomart-based data framework.

Key Features:

• Biomart-Based Data Integration: Implements biomart technology to store, query, and manage transcriptome datasets including contig sequences, expression quantification, functional annotations, and variation discovery results.
• Hierarchical Data Visualization: Provides multi-level exploration of transcriptome data from global graphical summaries to detailed gene- and contig-level information.

Scientific Applications:

• Transcriptome and Functional Genomics Analysis: Supports gene expression profiling, functional annotation analysis, and genetic variation discovery from RNA-Seq de novo assemblies.

Methodology:

RNABrowse structures RNA-Seq de novo outputs within a biomart database schema, enabling structured querying and hierarchical visualization of contigs, expression metrics, functional annotations, and sequence variation data.