RNAdetector

RNAdetector analyzes coding and non-coding RNAs from RNA-Seq, small RNA-Seq, and circRNA-Seq datasets to support transcriptome profiling across sequenced biological species.


Key Features:

  • Multi-technology support: Processes RNA-Seq, small RNA-Seq, and circRNA-Seq datasets.
  • Coding and non-coding RNA analysis: Analyzes mRNA (coding RNAs) and ncRNA (non-coding RNAs).
  • Cross-species analysis: Operates across any sequenced biological species.
  • Large-scale data processing: Handles large-scale RNA-Seq datasets efficiently for high-throughput studies.

Scientific Applications:

  • Transcriptome profiling: Enables detailed examination of mRNA and ncRNA molecules for transcriptome analyses.
  • Small RNA and circRNA characterization: Facilitates analysis of small RNAs and circular RNAs from respective sequencing experiments.
  • Large-scale genomics research: Supports high-throughput transcriptomic studies in genomics and molecular biology.

Methodology:

The provided description does not specify computational steps, algorithms, or file formats used.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
JavaScript, PHP, Perl, Shell, R, Other
Added:
10/21/2021
Last Updated:
10/21/2021

Operations

Data Inputs & Outputs

Differential gene expression profiling

Publications

La Ferlita A, Alaimo S, Di Bella S, Martorana E, Laliotis GI, Bertoni F, Cascione L, Tsichlis PN, Ferro A, Bosotti R, Pulvirenti A. RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinformatics. 2021;22(1). doi:10.1186/s12859-021-04211-7. PMID:34082707. PMCID:PMC8173825.

PMID: 34082707
PMCID: PMC8173825
Funding: - Ministero dell’Istruzione, dell’Università e della Ricerca: B96G18000590005 - PO-FESR Sicilia 14-20: G89J18000700007

Documentation

Downloads

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