RNAdetector

RNAdetector analyzes coding and non-coding RNAs from RNA-Seq, small RNA-Seq, and circRNA-Seq datasets to support transcriptome profiling across sequenced biological species.


Key Features:

  • Multi-technology support: Processes RNA-Seq, small RNA-Seq, and circRNA-Seq datasets.
  • Coding and non-coding RNA analysis: Analyzes mRNA (coding RNAs) and ncRNA (non-coding RNAs).
  • Cross-species analysis: Operates across any sequenced biological species.
  • Large-scale data processing: Handles large-scale RNA-Seq datasets efficiently for high-throughput studies.

Scientific Applications:

  • Transcriptome profiling: Enables detailed examination of mRNA and ncRNA molecules for transcriptome analyses.
  • Small RNA and circRNA characterization: Facilitates analysis of small RNAs and circular RNAs from respective sequencing experiments.
  • Large-scale genomics research: Supports high-throughput transcriptomic studies in genomics and molecular biology.

Methodology:

The provided description does not specify computational steps, algorithms, or file formats used.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
JavaScript, PHP, Perl, Shell, R, Other
Added:
10/21/2021
Last Updated:
10/21/2021

Operations

Publications

La Ferlita A, Alaimo S, Di Bella S, Martorana E, Laliotis GI, Bertoni F, Cascione L, Tsichlis PN, Ferro A, Bosotti R, Pulvirenti A. RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinformatics. 2021;22(1). doi:10.1186/s12859-021-04211-7. PMID:34082707. PMCID:PMC8173825.

PMID: 34082707
PMCID: PMC8173825
Funding: - Ministero dell’Istruzione, dell’Università e della Ricerca: B96G18000590005 - PO-FESR Sicilia 14-20: G89J18000700007

Documentation

Downloads

Links