RNAdetector
RNAdetector analyzes coding and non-coding RNAs from RNA-Seq, small RNA-Seq, and circRNA-Seq datasets to support transcriptome profiling across sequenced biological species.
Key Features:
- Multi-technology support: Processes RNA-Seq, small RNA-Seq, and circRNA-Seq datasets.
- Coding and non-coding RNA analysis: Analyzes mRNA (coding RNAs) and ncRNA (non-coding RNAs).
- Cross-species analysis: Operates across any sequenced biological species.
- Large-scale data processing: Handles large-scale RNA-Seq datasets efficiently for high-throughput studies.
Scientific Applications:
- Transcriptome profiling: Enables detailed examination of mRNA and ncRNA molecules for transcriptome analyses.
- Small RNA and circRNA characterization: Facilitates analysis of small RNAs and circular RNAs from respective sequencing experiments.
- Large-scale genomics research: Supports high-throughput transcriptomic studies in genomics and molecular biology.
Methodology:
The provided description does not specify computational steps, algorithms, or file formats used.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript, PHP, Perl, Shell, R, Other
- Added:
- 10/21/2021
- Last Updated:
- 10/21/2021
Operations
Publications
La Ferlita A, Alaimo S, Di Bella S, Martorana E, Laliotis GI, Bertoni F, Cascione L, Tsichlis PN, Ferro A, Bosotti R, Pulvirenti A. RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinformatics. 2021;22(1). doi:10.1186/s12859-021-04211-7. PMID:34082707. PMCID:PMC8173825.
PMID: 34082707
PMCID: PMC8173825
Funding: - Ministero dell’Istruzione, dell’Università e della Ricerca: B96G18000590005
- PO-FESR Sicilia 14-20: G89J18000700007
Documentation
Downloads
- Downloads pagehttps://rnadetector.atlas.dmi.unict.it/download.html