RNADisease
RNADisease curates RNA–disease associations across 117 species, 18 RNA types, and 4090 diseases to support analysis of RNA roles in disease pathogenesis.
Key Features:
- Expanded Data Sources: Incorporates data covering 117 species, 18 RNA types, and 4090 diseases, enabling exploration beyond noncoding RNAs in mammals.
- High-Throughput Sequencing Data Analysis: Integrates analyses from thousands of high-throughput sequencing datasets comparing cancerous and normal samples to identify differential RNA expression.
- RNA-Disease Enrichment Tool: Provides an enrichment tool that identifies significant associations between specific RNA molecules and diseases.
- RNA-Disease Prediction Tools: Offers four distinct prediction tools to forecast potential RNA–disease links based on existing data.
Scientific Applications:
- Molecular mechanism investigation: Supports investigation of the molecular underpinnings of disease at the RNA level.
- Biomarker and therapeutic target discovery: Facilitates identification of novel biomarkers and therapeutic targets by linking RNA changes to diseases.
- Comparative genomics and evolutionary biology: Supports comparative genomics and evolutionary biology research by providing cross-species RNA–disease data.
- Cancer research: Assists cancer studies by analyzing differential RNA expression between cancerous and normal samples.
Methodology:
Curation and integration of data from multiple high-throughput sequencing studies, and implementation of enrichment analysis and prediction tools to analyze RNA–disease associations.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 10/31/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Chen J, Lin J, Hu Y, Ye M, Yao L, Wu L, Zhang W, Wang M, Deng T, Guo F, Huang Y, Zhu B, Wang D. RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction. Nucleic Acids Research. 2022;51(D1):D1397-D1404. doi:10.1093/nar/gkac814. PMID:36134718. PMCID:PMC9825423.
DOI: 10.1093/nar/gkac814
PMID: 36134718
PMCID: PMC9825423
Funding: - National Key Research and Development Project of China: 2019YFA0801800, 2021YFC2500300
- National Natural Science Foundation of China: 62002153, 81930055, 82070109
- Guangdong Basic and Applied Basic Research Foundation: 2019A1515010784, 2022A1515011253
- Medical Scientific Research Foundation of Guangdong Province, China: A2022058