RNAget

RNAget provides secure, standardized programmatic access to genomic quantification matrices to enable sharing and analysis of RNA-seq, microarray, ATAC-seq, and ChIP-seq quantification data.

Key Features:

• Standardized API: Provides a unified programmatic interface for secure, interoperable access to genomic quantification matrices.
• Matrix data handling: Handles expression matrices from RNA-seq and microarray and supports slicing to extract specific subsets of rows and columns.
• Sequencing technology coverage: Supports RNA quantification and extends to ATAC-seq and ChIP-seq quantification matrices.
• Data security and access control: Implements secure access mechanisms and controls for confidential large-scale data sharing.

Scientific Applications:

• Transcriptomic studies: Enables analysis of RNA-seq and microarray quantifications for gene expression and regulatory investigations.
• Epigenetic research: Enables analysis of ATAC-seq and ChIP-seq quantifications for chromatin accessibility and protein–DNA interaction studies.
• Data integration and sharing: Facilitates standardized integration, sharing, and reproducible analysis of genomic quantification datasets across platforms.

Methodology:

Implements a programmatic API architecture with parameterized matrix slicing and secure access controls for retrieval of genomic quantification matrices.