rNMPID

rNMPID database compiles and integrates genome-wide ribonucleotide monophosphate (rNMP) embedment data in genomic DNA from diverse rNMP-mapping techniques.


Key Features:

  • Integrated rNMP-Mapping Datasets: Aggregates data from multiple rNMP-mapping methodologies, documenting strand bias, incorporation preferences, and genetic background–specific embedment patterns.
  • Cross-Species Comparative Analysis: Includes datasets from multiple organisms to enable comparative analysis of rNMP incorporation patterns and evolutionary trends.

Scientific Applications:

  • Genome Stability and Disease Research: Supports investigation of rNMP incorporation patterns in relation to genome stability, cellular processes, and disease associations including cancer.

Methodology:

The database systematically collects and standardizes genome-wide datasets generated by diverse rNMP-mapping techniques to catalog rNMP embedment sites and associated genomic features for integrative analysis.

Topics

Details

License:
AGPL-3.0
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
6/18/2024
Last Updated:
6/18/2024

Operations

Data Inputs & Outputs

Publications

Yang J, Sun M, Ran Z, Yang T, Kundnani DL, Storici F, Xu P. rNMPID: a database for riboNucleoside MonoPhosphates in DNA. Bioinformatics Advances. 2024;4(1). doi:10.1093/bioadv/vbae063. PMID:38736683. PMCID:PMC11088741.

PMID: 38736683
Funding: - National Institutes of Health: NIEHS R01 ES026243 - Howard Hughes Medical Institute Faculty Scholars Award: 55108574 - Mathers Foundation: AWD-002589

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