ROCKETSHIP

ROCKETSHIP performs quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) data to enable concurrent evaluation of multiple kinetic models and parameters.


Key Features:

  • Multiple Kinetic Models: Supports fitting and comparison of multiple DCE-MRI kinetic models to extract pharmacokinetic parameters.
  • Data-driven Nested Model Analysis: Implements nested model selection to evaluate model complexity and parameter relevance in a data-driven manner.
  • MATLAB implementation: Implemented in the MATLAB programming language for algorithm execution and model fitting.
  • Validation with Simulated Data: Performance and robustness assessed using simulated DCE-MRI datasets to evaluate fitting reliability.
  • Preclinical and Clinical Applicability: Applied to human brain DCE-MRI and a murine tumor model for cross-scale analysis.

Scientific Applications:

  • Pathology Characterization: Extraction of kinetic parameters for tissue pathology characterization from DCE-MRI.
  • Treatment Response Assessment: Quantitative evaluation of treatment-induced changes in DCE-MRI kinetics.
  • Oncology Research: Analysis of tumor perfusion and permeability in preclinical and clinical tumor studies.
  • Neurology Research: Application to human brain DCE-MRI studies for neurological investigation.

Methodology:

Implemented in MATLAB; performs concurrent fitting of multiple kinetic models including data-driven nested model analysis and validated using simulated data, with applications demonstrated on human brain DCE-MRI and a murine tumor model.

Topics

Details

License:
GPL-2.0
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
MATLAB
Added:
9/25/2018
Last Updated:
1/11/2019

Operations

Publications

Barnes SR, Ng TSC, Santa-Maria N, Montagne A, Zlokovic BV, Jacobs RE. ROCKETSHIP: a flexible and modular software tool for the planning, processing and analysis of dynamic MRI studies. BMC Medical Imaging. 2015;15(1). doi:10.1186/s12880-015-0062-3. PMID:26076957. PMCID:PMC4466867.

Documentation

Links