roi_table
roi_table performs computational processing and provenance tracking of large high-throughput biomedical datasets, including next-generation DNA sequencing, to support statistical and machine-learning analyses for applications such as genomics and finger vein biometric recognition.
Key Features:
- Transparency and Reproducibility: Automatically tracks all computational processes and provenance to enable inspection, publication, and reuse of analyses.
- Scalability for Biomedical Analyses: Supports large-scale analysis and interpretation of vast high-throughput datasets generated by technologies such as next-generation DNA sequencing.
Scientific Applications:
- Genomics: Processing and analysis of next-generation DNA sequencing datasets to support statistical and machine-learning workflows.
- Finger Vein Biometric Recognition: Analysis of finger vein data using (2D)² PCA for feature extraction, metric learning for individualized classification, KNN classifiers tailored per individual, and SMOTE to address class imbalance, with reported recognition rates up to 99.17% in studies.
Methodology:
Computational methods explicitly include (2D)² PCA for feature extraction, metric learning for individualized classification, KNN classifiers tailored per individual, SMOTE for class-imbalance mitigation, and general statistical processing of large datasets.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Yang G, Xi X, Yin Y. Finger Vein Recognition Based on (2D)<sup>2</sup>PCA and Metric Learning. Journal of Biomedicine and Biotechnology. 2012;2012:1-9. doi:10.1155/2012/324249. PMID:22675248. PMCID:PMC3364026.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.