RPS
RPS provides a curated repository of RNAs involved in liquid-liquid phase separation (LLPS) to support analysis of RNA roles in membraneless organelles.
Key Features:
- Comprehensive RNA Collection: Contains 21,613 LLPS-related RNAs from eukaryotes and viruses across 20 biomolecular condensates, categorized as 'Reviewed', 'High-throughput', and 'Predicted'.
- Detailed Annotations: Annotates sequence features, structural characteristics, RNA-protein and RNA-RNA interactions, and RNA modifications relevant to LLPS.
- Disease Associations: Includes disease annotations linking specific LLPS-related RNAs to pathological contexts.
Scientific Applications:
- Basic Research: Supports studies of the mechanisms by which RNAs contribute to the formation and regulation of membraneless organelles.
- Disease Mechanism Exploration: Enables identification and analysis of LLPS-related RNAs implicated in disease pathogenesis.
- Systems Biology Approaches: Facilitates integrative analyses combining LLPS RNA data with other omics datasets for systems-level investigation.
Methodology:
No computational methods or data-processing steps were specified in the provided description.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 3/29/2022
- Last Updated:
- 3/29/2022
Operations
Data Inputs & Outputs
Publications
Liu M, Li H, Luo X, Cai J, Chen T, Xie Y, Ren J, Zuo Z. RPS: a comprehensive database of RNAs involved in liquid–liquid phase separation. Nucleic Acids Research. 2021;50(D1):D347-D355. doi:10.1093/nar/gkab986. PMID:34718734. PMCID:PMC8728229.
DOI: 10.1093/NAR/GKAB986
PMID: 34718734
PMCID: PMC8728229
Funding: - National Natural Science Foundation of China: 31771462, 31801105, 81772614, 91753137, U1611261
- Program for Guangdong Introducing Innovative and Entrepreneurial Teams: 2017ZT07S096
- Guangdong Basic and Applied Basic Research Foundation: 2020A1515011219, 2021B1515020108