rsHRF (Python)
rsHRF (Python) estimates and deconvolves resting-state hemodynamic response functions (HRFs) from BOLD fMRI signals to enable analysis of HRF variability in resting-state neuroimaging.
Key Features:
- Cross-Platform Implementation: Implemented in Matlab and Python.
- HRF Estimation and Deconvolution: Estimates HRFs and performs deconvolution from resting-state BOLD signals and resting-state fMRI data.
- Statistical Analysis Tools: Provides statistical analysis tools to assess variability and components of BOLD signals in resting-state studies.
- Visualization Capabilities: Provides visualization options to display HRFs and related data.
Scientific Applications:
- Resting-state fMRI interpretation: Improves interpretation of resting-state fMRI by providing HRF estimates for signal origin assessment.
- Variability reduction: Reduces intra- and inter-subject variability in activation and connectivity measurements.
- Connectivity and temporal precedence: Supports connectivity analyses by improving temporal precedence estimates in resting-state studies.
Methodology:
rsHRF employs a well-defined algorithm for HRF estimation and deconvolution tailored to resting-state protocols and has been validated using publicly available resting-state fMRI datasets.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 2/3/2022
- Last Updated:
- 2/7/2022
Operations
Publications
Wu G, Colenbier N, Van Den Bossche S, Clauw K, Johri A, Tandon M, Marinazzo D. rsHRF: A toolbox for resting-state HRF estimation and deconvolution. NeuroImage. 2021;244:118591. doi:10.1016/j.neuroimage.2021.118591. PMID:34560269.
PMID: 34560269
Documentation
Downloads
- Source codehttps://github.com/BIDS-Apps/rsHRF/tags