runibic

The software tool 'runibic' is a Bioconductor package that provides a parallel implementation of UniBic, an accurate biclustering algorithm. The package includes a faster parallel version of the original algorithm, improved memory management, modularity for building new methods, and integration with modern Bioconductor packages.

Topic

Gene expression;Sequencing;Microarray experiment

Detail

  • Operation: Clustering

  • Software interface: Library

  • Language: R

  • License: The MIT + file LICENSE

  • Cost: Free

  • Version name: 1.20.0

  • Credit: PL-Grid Infrastructure, the National Institutes of Health (USA).

  • Input: -

  • Output: -

  • Contact: Patryk Orzechowski patryk.orzechowski@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
  • Orzechowski P, et al. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. 2018; 34:4302-4304. doi: 10.1093/bioinformatics/bty512
  • https://doi.org/10.1093/bioinformatics/bty512
  • PMID: 29939213
  • PMC: PMC6289127

Download and documentation

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