S2O

S2O converts IBM SPSS Statistics datasets into the CDISC Operational Data Model (ODM) format to enable standardized representation, archival, and regulatory-compliant exchange of clinical trial and patient data.


Key Features:

  • Data Conversion: Maps SPSS variables and patient values to the CDISC ODM structure to convert SPSS datasets into ODM-compliant data.
  • Syntactic and Semantic Validation: Performs syntactic and semantic checks during transformation and validates outputs using various ODM tools and reverse transformations from ODM back into SPSS.
  • Command-Line Implementation: Executes conversion as a command-line tool via an internal Java plugin within SPSS.
  • Regulatory Compliance: Produces CDISC ODM output to support regulatory requirements for electronic data capture (EDC), including secure and auditable data collection.
  • EDC Migration Facilitation: Facilitates migration from spreadsheet-based systems such as Excel and SPSS to EDC systems that support multi-user and multicenter trials while preserving audit trails.

Scientific Applications:

  • EDC Integration: Enables transfer of legacy SPSS and spreadsheet datasets into CDISC ODM for integration with regulated EDC platforms used in clinical trials.
  • Standardized Archival: Supports standardized archival and exchange of clinical trial meta-data and patient data using the CDISC ODM standard.
  • Data Integrity and Compliance: Supports auditable, regulatory-compliant data management to enhance the integrity and reliability of clinical trial data.

Methodology:

Implements a mapping model between SPSS and CDISC ODM data structures to address non-corresponding statistical/display attributes and missing study-related ODM elements; performs transformations via an internal Java plugin callable from the command line and validates results using ODM tools and reverse transformations to SPSS.

Topics

Details

License:
LGPL-2.0
Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java
Added:
7/16/2018
Last Updated:
12/10/2018

Operations

Publications

Bruland P, Dugas M. S2O – A software tool for integrating research data from general purpose statistic software into electronic data capture systems. BMC Medical Informatics and Decision Making. 2017;17(1). doi:10.1186/s12911-016-0402-4. PMID:28061771. PMCID:PMC5219713.

Documentation