SAGER
SAGER integrates genomic and transcriptomic data from Symbiodiniaceae dinoflagellates and marine algae to support gene annotation, expression analysis, and comparative genomics.
Key Features:
- Genomic and Transcriptomic Integration: Consolidates draft genome assemblies from multiple Symbiodiniaceae species and marine algal genomes from MMETSP and PhyloDB, including transcriptome datasets from diverse culture conditions.
- Comparative Genomics and Homology Analysis: Provides BLAST-based sequence similarity searches and ortholog identification across Symbiodiniaceae, marine algae, and protists.
Scientific Applications:
- Coral Symbiosis and Stress Response Research: Enables analysis of gene function, expression patterns, and evolutionary relationships underlying Symbiodiniaceae–coral interactions and environmental adaptation.
Methodology:
SAGER aggregates genome draft assemblies and transcriptome datasets, implements BLAST for homology searches, and supports ortholog detection to facilitate cross-species comparative and functional genomic analyses.
Topics
Details
- Added:
- 1/18/2021
- Last Updated:
- 3/20/2021
Operations
Publications
Yu L, Li T, Li L, Lin X, Li H, Liu C, Guo C, Lin S. SAGER: a database of Symbiodiniaceae and Algal Genomic Resource. Database. 2020;2020. doi:10.1093/database/baaa051. PMID:32621601. PMCID:PMC7334889.
PMID: 32621601
PMCID: PMC7334889
Funding: - Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology: No.2018SDKJ0406–3
- Natural Science Foundation of China: NSFC 31661143029 and 41776116