salmobase2

salmobase2 provides an integrated genomic repository and analysis resource for salmonid omics data, enabling search, cross-omics integration, and visualization of duplicated genes and synteny maps.

Key Features:

• Searchable Omics Data: Provides comprehensive search capabilities across various salmonid omics datasets.
• Integrated Omics Connectivity: Connects disparate omics datasets to enable cross-layer analyses within salmonid genomes.
• Visualization of Duplicated Genes and Synteny: Generates synteny maps and visualizations to examine duplicated genes and genomic architecture.
• Scalability for New Species and Omics Data: Supports the addition of new salmonid species and omics datasets to expand the repository.

Scientific Applications:

• Evolutionary studies: Analyze duplicated genes and synteny to infer evolutionary relationships within salmonid genomes.
• Functional genomics: Integrate omics datasets to support gene function and expression analyses.
• Exploration of genomic architecture: Examine duplication patterns and syntenic relationships to characterize salmonid genome structure.

Methodology:

Indexes and makes omics datasets searchable, integrates disparate omics datasets, and generates visualizations of duplicated genes and synteny maps.