SAM
SAM implements self-adapting mixture priors to integrate historical data with current clinical trial data, dynamically adjusting information borrowing to mitigate prior-data conflict.
Key Features:
- Self-Adapting Mixture Priors: Mixture priors combine informative and noninformative components with mixing weights determined dynamically using likelihood ratio test statistics or Bayes factors.
- Dynamic Information Borrowing: Mixing weights are adjusted in a data-driven manner to increase or decrease borrowing from historical datasets according to the degree of prior-data conflict.
- Sample-Size Robustness: Framework applies to both finite and large sample sizes, supporting consistent information borrowing across varying trial scales.
Scientific Applications:
- Clinical Trials: Integrating historical data into current efficacy and safety analyses while controlling the influence of prior information when conflict is detected.
- Sequencing Analysis: Applying the SAM prior principles to analyses that utilize alignment information recorded in Sequence Alignment/Map (SAM) format files.
Methodology:
Mixing weights for informative and noninformative prior components are computed using likelihood ratio test statistics or Bayes factors and are adjusted according to observed prior-data conflict to control information borrowing.
Topics
Details
- License:
- BSD-3-Clause
- Tool Type:
- library
- Programming Languages:
- C++, C, Python, R
- Added:
- 3/18/2024
- Last Updated:
- 3/18/2024
Operations
Publications
Yang P, Zhao Y, Nie L, Vallejo J, Yuan Y. SAM: Self-Adapting Mixture Prior to Dynamically Borrow Information from Historical Data in Clinical Trials. Biometrics. 2023;79(4):2857-2868. doi:10.1111/biom.13927. PMID:37721513. PMCID:PMC10842647.
Liu Y, Shen X, Gong Y, Liu Y, Song B, Zeng X. Sequence Alignment/Map format: a comprehensive review of approaches and applications. Briefings in Bioinformatics. 2023;24(5). doi:10.1093/bib/bbad320. PMID:37668049.