SAM

SAM implements self-adapting mixture priors to integrate historical data with current clinical trial data, dynamically adjusting information borrowing to mitigate prior-data conflict.


Key Features:

  • Self-Adapting Mixture Priors: Mixture priors combine informative and noninformative components with mixing weights determined dynamically using likelihood ratio test statistics or Bayes factors.
  • Dynamic Information Borrowing: Mixing weights are adjusted in a data-driven manner to increase or decrease borrowing from historical datasets according to the degree of prior-data conflict.
  • Sample-Size Robustness: Framework applies to both finite and large sample sizes, supporting consistent information borrowing across varying trial scales.

Scientific Applications:

  • Clinical Trials: Integrating historical data into current efficacy and safety analyses while controlling the influence of prior information when conflict is detected.
  • Sequencing Analysis: Applying the SAM prior principles to analyses that utilize alignment information recorded in Sequence Alignment/Map (SAM) format files.

Methodology:

Mixing weights for informative and noninformative prior components are computed using likelihood ratio test statistics or Bayes factors and are adjusted according to observed prior-data conflict to control information borrowing.

Topics

Details

License:
BSD-3-Clause
Tool Type:
library
Programming Languages:
C++, C, Python, R
Added:
3/18/2024
Last Updated:
3/18/2024

Operations

Publications

Yang P, Zhao Y, Nie L, Vallejo J, Yuan Y. SAM: Self-Adapting Mixture Prior to Dynamically Borrow Information from Historical Data in Clinical Trials. Biometrics. 2023;79(4):2857-2868. doi:10.1111/biom.13927. PMID:37721513. PMCID:PMC10842647.

PMID: 37721513
Funding: - National Cancer Institute: P50CA127001, P50CA221707 - National Health Institute: 5U01DK108328 - Bettyann Asche Murray Distinguished Professorship: CA016672

Liu Y, Shen X, Gong Y, Liu Y, Song B, Zeng X. Sequence Alignment/Map format: a comprehensive review of approaches and applications. Briefings in Bioinformatics. 2023;24(5). doi:10.1093/bib/bbad320. PMID:37668049.

PMID: 37668049
Funding: - National Natural Science Foundation of China: 61872309, 61972138, 62102140, 62122025 - Hunan Provincial Natural Science Foundation of China: 2020JJ4215, 2021JJ10020 - Key Research and Development Program of Changsha: kq2004016 - Open Research Projects of Zhejiang Lab: 2021RD0AB02

Links