SANTIA
SANTIA performs automated detection and removal of artifacts from extracellular neuronal recordings to improve the quality of invasive local field potential (LFP) data for neuroscientific analysis.
Key Features:
- MATLAB implementation: MATLAB-based toolbox for signal processing and analysis of extracellular neuronal recordings.
- Neural network–based machine learning: Employs neural network–based machine learning techniques for artifact identification.
- Data labeling and model training: Provides workflows to label recordings and train models for identification and removal of artifacts.
- Artifact removal for LFPs: Automates removal of artifacts from invasive extracellular local field potential (LFP) signals.
- Quality control for large datasets: Targets noise and artifacts in high-volume neuronal recordings to support data quality control.
Scientific Applications:
- Neuronal signal preprocessing: Produces cleaner LFP data for downstream analyses such as spike-field and network activity studies.
- Brain activity research: Improves interpretation of neuronal network activation and brain functionalities from extracellular recordings.
- Neurological disorder studies: Supports research on brain activity and neurological disorders by providing artifact-reduced LFP datasets.
Methodology:
Implemented in MATLAB and using neural network–based machine learning to label recordings and train models for automated detection and removal of artifacts from invasive extracellular LFP signals.
Topics
Details
- Tool Type:
- workflow
- Programming Languages:
- MATLAB
- Added:
- 1/10/2022
- Last Updated:
- 1/10/2022
Operations
Publications
Fabietti M, Mahmud M, Lotfi A, Kaiser MS, Averna A, Guggenmos DJ, Nudo RJ, Chiappalone M, Chen J. SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals. Brain Informatics. 2021;8(1). doi:10.1186/s40708-021-00135-3. PMID:34283328. PMCID:PMC8292498.
PMID: 34283328
PMCID: PMC8292498
Funding: - Nottingham Trent University: PhD studentship 2019
- Beijing Municipal Commission of Education: KM201710005026
- National Basic Research Program of China: 2014CB744600
- Natural Science Foundation of Beijing Municipality: 4182005