sbgr

sbgr provides programmatic access to the Seven Bridges Genomics API from R to retrieve and manipulate genomic data for downstream analysis within the Bioconductor ecosystem.

Key Features:

• Integration with Seven Bridges Genomics: Interfaces with the Seven Bridges Genomics API to access platform resources and invoke analyses programmatically.
• R-based environment: Operates within the R programming environment and integrates with Bioconductor packages for statistical analysis and visualization.
• Interoperability: Aligns with the Bioconductor ecosystem to enable interoperability with other Bioconductor packages.
• Community-driven development: Developed and maintained within the Bioconductor community to support collaborative contributions.
• Quality assurance: Subject to Bioconductor's initial review process and continuous automated testing.

Scientific Applications:

• Genomic data access and management: Retrieve, list, and manage genomic datasets and resources hosted on Seven Bridges Genomics for downstream analysis.
• High-throughput genomics analysis: Combine Seven Bridges data access with R/Bioconductor statistical and visualization tools to analyze high-throughput genomics data.
• Translational and clinical research workflows: Integrate Seven Bridges resources into analyses that support research from basic genomic studies to clinical applications.

Methodology:

Implements an R client that integrates with the Bioconductor framework to call the Seven Bridges Genomics API and enable data manipulation and analysis in R.