scRNABatchQC

scRNABatchQC is an R package for simultaneously assessing the quality and consistency of multiple single-cell RNA sequencing (scRNA-seq) datasets. Single-cell RNA sequencing is a powerful technique for studying cellular heterogeneity, but the data can be affected by technical artifacts and biological variations. Distinguishing between these two factors is crucial for accurate data interpretation.

While existing tools can detect and remove low-quality cells within a single dataset, scRNABatchQC fills a gap by comparing multiple datasets across various technical and biological features, allowing researchers to identify systematic biases, batch effects, and outliers that may confound the analysis.