ScanEV
ScanEV performs automated detection and morphometric analysis of extracellular vesicles (EVs), including exosomes, in transmission electron microscopy (TEM) images to quantify size and shape characteristics.
Key Features:
- Automated Detection: Identifies "cup-shaped" particles characteristic of extracellular vesicles such as exosomes within TEM images.
- Morphometric Analysis: Calculates size and shape metrics of detected EVs to provide quantitative morphometric data.
- Convolutional Neural Network (CNN): Uses a CNN-based deep learning architecture for image recognition to detect and characterize EVs in TEM images.
Scientific Applications:
- EV Characterization: Provides precise morphometric data for characterization of extracellular vesicles and exosomes.
- Cell Communication Studies: Supports investigations into EV-mediated cell communication by quantifying vesicle morphology.
- Disease Mechanisms and Therapeutic Research: Aids studies of disease mechanisms and potential therapeutic applications by supplying quantitative EV morphometrics in physiological and pathological contexts.
Methodology:
ScanEV applies a convolutional neural network trained on TEM image datasets to recognize EV features and compute morphometric measurements, with model performance improving as it learns from larger datasets.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 10/4/2021
- Last Updated:
- 10/5/2021
Operations
Publications
Nikishin I, Dulimov R, Skryabin G, Galetsky S, Tchevkina E, Bagrov D. ScanEV – A neural network-based tool for the automated detection of extracellular vesicles in TEM images. Micron. 2021;145:103044. doi:10.1016/j.micron.2021.103044. PMID:33676158.
PMID: 33676158