ScanEV

ScanEV performs automated detection and morphometric analysis of extracellular vesicles (EVs), including exosomes, in transmission electron microscopy (TEM) images to quantify size and shape characteristics.


Key Features:

  • Automated Detection: Identifies "cup-shaped" particles characteristic of extracellular vesicles such as exosomes within TEM images.
  • Morphometric Analysis: Calculates size and shape metrics of detected EVs to provide quantitative morphometric data.
  • Convolutional Neural Network (CNN): Uses a CNN-based deep learning architecture for image recognition to detect and characterize EVs in TEM images.

Scientific Applications:

  • EV Characterization: Provides precise morphometric data for characterization of extracellular vesicles and exosomes.
  • Cell Communication Studies: Supports investigations into EV-mediated cell communication by quantifying vesicle morphology.
  • Disease Mechanisms and Therapeutic Research: Aids studies of disease mechanisms and potential therapeutic applications by supplying quantitative EV morphometrics in physiological and pathological contexts.

Methodology:

ScanEV applies a convolutional neural network trained on TEM image datasets to recognize EV features and compute morphometric measurements, with model performance improving as it learns from larger datasets.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
10/4/2021
Last Updated:
10/5/2021

Operations

Publications

Nikishin I, Dulimov R, Skryabin G, Galetsky S, Tchevkina E, Bagrov D. ScanEV – A neural network-based tool for the automated detection of extracellular vesicles in TEM images. Micron. 2021;145:103044. doi:10.1016/j.micron.2021.103044. PMID:33676158.

Documentation