ScaPD

ScaPD catalogs scaffold proteins and their roles in signal transduction to support analysis of scaffold-mediated signaling networks.


Key Features:

  • Content: Contains 273 scaffold proteins and annotations linking them to 1,118 associated signaling pathways.
  • Data types: Integrates computationally predicted and experimentally validated scaffold–pathway associations.
  • Manual curation: Entries are manually curated to ensure annotation quality.
  • Biological focus: Centers exclusively on scaffold proteins and their roles in tethering signaling molecules and regulating pathway selectivity.

Scientific Applications:

  • Signaling network analysis: Enables exploration of scaffold-mediated interactions within cellular signaling networks.
  • Pathway regulation studies: Supports investigation of how scaffold proteins influence pathway selectivity and signaling outcomes.
  • Disease and target research: Facilitates studies of disease mechanisms and identification of potential therapeutic targets involving scaffold proteins.
  • Basic research: Serves as a reference for studying scaffold protein functions in cellular processes.

Methodology:

Integrates computationally predicted and experimentally validated data and applies manual curation of entries.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
7/28/2018
Last Updated:
1/17/2019

Operations

Publications

Han X, Wang J, Wang J, Liu S, Hu J, Zhu H, Qian J. ScaPD: a database for human scaffold proteins. BMC Bioinformatics. 2017;18(S11). doi:10.1186/s12859-017-1806-6. PMID:28984188. PMCID:PMC5629588.

Documentation