sceasy

sceasy converts single-cell RNA sequencing (scRNAseq) datasets between different file formats to enable visualization and sharing of high-dimensional single-cell data.

Key Features:

• Format conversion: Converts scRNAseq datasets between different file formats required by downstream tools.
• Large-dataset support: Handles datasets that can encompass millions of cells.
• Visualization-tool compatibility: Produces formats compatible with interactive analysis and visualization tools.
• Memory reduction: Conversion workflows that can reduce memory requirements for large datasets.
• Preparation for web-based platforms: Converts data into formats used by web-based single-cell visualization and sharing platforms.

Scientific Applications:

• Data visualization: Enables interactive visualization and interpretation of complex single-cell datasets.
• Data sharing in publications: Supports preparation of scRNAseq data for inclusion in scientific reports and publications.
• Web-based dissemination: Facilitates conversion of datasets for web-based sharing and visualization platforms.

Methodology:

Performs computational file-format conversion of scRNAseq datasets to produce outputs compatible with targeted visualization and analysis platforms.