SCIPION WEB TOOLS

SCIPION WEB TOOLS integrates 3D electron microscopy (3DEM) image-processing software into standardized, reproducible workflows for reconstruction and analysis of macromolecular structures.


Key Features:

  • Integration of Multiple 3DEM Software Packages: Integrates diverse 3DEM software packages into a cohesive framework to run tools within unified workflows.
  • Workflow-Based Approach: Implements reusable, standardized, and traceable image-processing protocols for consistent execution of processing steps.
  • Interoperability: Ensures data compatibility and smooth transfer between integrated applications within workflows.

Scientific Applications:

  • Reconstruction of Macromolecular Structures: Supports reconstruction pipelines for macromolecular complexes from 3DEM data.
  • High-Resolution Structural Biology: Enables analyses required for high-resolution structural biology studies.
  • Standardization and Reproducibility: Facilitates reproducible and traceable image-processing across 3DEM studies.

Methodology:

Workflow-based architecture enabling creation, execution, reuse, and standardization of detailed image-processing protocols to ensure traceability and reproducibility.

Topics

Collections

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
7/11/2016
Last Updated:
11/24/2024

Operations

Publications

de la Rosa-Trevín J, Quintana A, del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas J, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano C, Carazo J. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy. Journal of Structural Biology. 2016;195(1):93-99. doi:10.1016/j.jsb.2016.04.010. PMID:27108186.

PMID: 27108186
Funding: - MINECO: AIC-A-2011-0638, BFU2013-41249-P, BIO2013-44647-R - Comunidad de Madrid: S2010/BMD-2305

Documentation