SCIPION WEB TOOLS
SCIPION WEB TOOLS integrates 3D electron microscopy (3DEM) image-processing software into standardized, reproducible workflows for reconstruction and analysis of macromolecular structures.
Key Features:
- Integration of Multiple 3DEM Software Packages: Integrates diverse 3DEM software packages into a cohesive framework to run tools within unified workflows.
- Workflow-Based Approach: Implements reusable, standardized, and traceable image-processing protocols for consistent execution of processing steps.
- Interoperability: Ensures data compatibility and smooth transfer between integrated applications within workflows.
Scientific Applications:
- Reconstruction of Macromolecular Structures: Supports reconstruction pipelines for macromolecular complexes from 3DEM data.
- High-Resolution Structural Biology: Enables analyses required for high-resolution structural biology studies.
- Standardization and Reproducibility: Facilitates reproducible and traceable image-processing across 3DEM studies.
Methodology:
Workflow-based architecture enabling creation, execution, reuse, and standardization of detailed image-processing protocols to ensure traceability and reproducibility.
Topics
Collections
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 7/11/2016
- Last Updated:
- 11/24/2024
Operations
Publications
de la Rosa-Trevín J, Quintana A, del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas J, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano C, Carazo J. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy. Journal of Structural Biology. 2016;195(1):93-99. doi:10.1016/j.jsb.2016.04.010. PMID:27108186.