scToppR

scToppR provides an R interface to the ToppGene Suite for functional enrichment analysis and visualization directly from R programs and scripts.

Key Features:

• ToppGene Suite Integration: scToppR interacts with the ToppGene database to perform functional enrichment analysis without requiring web interface interaction.
• Data Retrieval: scToppR downloads functional enrichment dataframes from ToppGene for further processing in R.
• Visualization: scToppR uses the R environment to visualize functional enrichment results.

Scientific Applications:

• Functional Enrichment Analysis: scToppR enables functional enrichment analysis of gene sets through direct database access and control from R.
• Results Visualization: scToppR supports visualization of functional enrichment results within the R environment.

Methodology:

scToppR interacts with the ToppGene database via an R interface to download functional enrichment dataframes for analysis and visualization in R.