SemiCompRisks

SemiCompRisks implements analysis of semi-competing risks data using illness-death multi-state models to quantify relationships between non-terminal and terminal events in medical and epidemiological studies.


Key Features:

  • Model Flexibility: Supports independent and cluster-correlated semi-competing risks using an illness-death multi-state model framework.
  • Model Specifications: Supports accelerated failure time and proportional hazards regression, parametric or non-parametric baseline survival functions, parametric or non-parametric random-effects distributions for clustered data, and Markov or semi-Markov specifications for the terminal event following a non-terminal event.
  • Estimation Methods: Implements Bayesian estimation for general models and maximum likelihood estimation (MLE) for selected parametric models.
  • Complementary Analyses: Includes functions for univariate survival analysis.

Scientific Applications:

  • Medical research: Enables analysis of disease progression and survival where non-terminal events (e.g., progression) and terminal events (e.g., death) interact.
  • Epidemiology: Facilitates population-level inference about the relationship between non-terminal events and mortality in cohort and longitudinal studies.

Methodology:

Uses the illness-death multi-state model with options for accelerated failure time or proportional hazards regression, parametric or non-parametric baseline survival, parametric or non-parametric random effects for clustered data, Markov or semi-Markov transition specifications, and estimation by Bayesian methods or MLE for selected parametric cases.

Topics

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Programming Languages:
R
Added:
3/19/2021
Last Updated:
4/8/2021

Operations

Publications

Alvares D, Haneuse S, Lee C, Lee K. SemiCompRisks: An R Package for the Analysis of Independent and Cluster-correlated Semi-competing Risks Data. The R Journal. 2019;11(1):376. doi:10.32614/rj-2019-038. PMID:33604061. PMCID:PMC7889044.