SeqCode

SeqCode performs visualization and analysis of high-throughput sequencing data to support standardized graphical data mining and downstream genomic analyses.

Key Features:

• Implementation: Written in ANSI C.
• Portability: Portable to almost any genome and operable across diverse computational environments.
• Analytical modules: Consolidates quality control, read mapping, peak calling, and counting into a unified workflow.
• Visualization and graphical data mining: Provides standardized graphical data mining and visualization capabilities for sequencing datasets.
• Open-suite architecture: Distributed as an open suite of applications for sequencing data processing.
• Computational stability and efficiency: Employs stable computational methods with a focus on efficiency and performance.

Scientific Applications:

• High-throughput genomic analyses: Supports professional analysis of sequencing datasets across a range of genomic studies.
• Education and training: Serves as a platform for teaching and training in high-throughput sequencing analysis.

Methodology:

Implemented in ANSI C, SeqCode performs quality control, read mapping, peak calling, and counting and processes sequencing data across diverse computational environments using stable computational methods focused on efficiency.