seqmatchall WS (husar)

Takes a set of sequences and does an all-against-all pairwise comparison of words (fragments of the sequences of a specified fixed size) in the sequences, finding regions of identity between any two sequences.

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Topics

Sequence analysis

Details

Tool Type:: api
Added:: 8/3/2015
Last Updated:: 12/10/2018

Operations

Sequence analysis

Data Inputs & Outputs

Sequence analysis

Inputs

Nucleic acid sequence (raw)
- Textual format
Sequence alignment
- Textual format
- XML

Outputs

Nucleic acid features
- PDF
- PNG
PCR primers
- Image format

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

DOI: 10.1016/S0168-9525(00)02024-2

Documentation

General

http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/seqmatchall.html

Links

Software catalogue

https://www.biocatalogue.org/services/3653

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