sequence_in_sequence_finder
sequence_in_sequence_finder identifies nucleic subsequences within larger nucleotide sequences for genome- and chromosome-scale analysis.
Key Features:
- High Accuracy: Ensures precise identification of nucleic subsequences.
- Speed and Efficiency: Capable of analyzing entire chromosomes or genomes within seconds.
- Genome-scale Processing: Processes whole chromosome- and genome-level sequence data.
Scientific Applications:
- Comparative Genomics: Detection and comparison of nucleic subsequences across genomes.
- Mutation Analysis: Identification of nucleotide subsequences relevant to variant and mutation studies.
- Gene Expression Studies: Locating nucleotide sequences associated with genes or transcripts to support expression analyses.
Methodology:
No computational methods are specified in the provided description.
Topics
Details
- License:
- Zlib
- Maturity:
- Mature
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux
- Programming Languages:
- C
- Added:
- 1/10/2022
- Last Updated:
- 1/10/2022
Operations
Publications
Haschka T. haschka/sequence_in_sequence_finder: Initial Public Release [Internet]. Zenodo; 2021. Available from: https://zenodo.org/record/5510252
Downloads
- Source codehttps://github.com/haschka/sequence_in_sequence_finderGithub Repository of the sequence in sequence finder