sequence_in_sequence_finder

sequence_in_sequence_finder identifies nucleic subsequences within larger nucleotide sequences for genome- and chromosome-scale analysis.


Key Features:

  • High Accuracy: Ensures precise identification of nucleic subsequences.
  • Speed and Efficiency: Capable of analyzing entire chromosomes or genomes within seconds.
  • Genome-scale Processing: Processes whole chromosome- and genome-level sequence data.

Scientific Applications:

  • Comparative Genomics: Detection and comparison of nucleic subsequences across genomes.
  • Mutation Analysis: Identification of nucleotide subsequences relevant to variant and mutation studies.
  • Gene Expression Studies: Locating nucleotide sequences associated with genes or transcripts to support expression analyses.

Methodology:

No computational methods are specified in the provided description.

Topics

Details

License:
Zlib
Maturity:
Mature
Cost:
Free of charge (with restrictions)
Tool Type:
command-line tool
Operating Systems:
Mac, Linux
Programming Languages:
C
Added:
1/10/2022
Last Updated:
1/10/2022

Operations

Publications

Haschka T. haschka/sequence_in_sequence_finder: Initial Public Release [Internet]. Zenodo; 2021. Available from: https://zenodo.org/record/5510252

Downloads

Links