SER

SER estimates short-period environmental regimes from time-series environmental and biotic data to characterize temporal patterns such as the frequency of mean and extreme events and rates of change.


Key Features:

  • Versatility Across Variables: Supports environmental and biotic variables including nutrient concentration, light levels, and dissolved oxygen as inputs for regime estimation.
  • Customizable Time Frames: Computes environmental-regime metrics over user-specified intervals (via the days_bf argument), allowing windows that range from days to years.
  • Enhanced Ecological Insights: Incorporation of environmental-regime metrics can increase explained variation in temporal β-diversity and its components.

Scientific Applications:

  • Ecological Studies: Analyzes temporal environmental dynamics to elucidate relationships with community metrics such as species diversity, distribution, and temporal β-diversity.
  • Interdisciplinary Research: Applies temporal-regime analysis to other domains such as social science, socioeconomics, and epidemiology to study the effects of historical dynamics on target variables.

Methodology:

Applies a statistical framework to estimate environmental regimes by analyzing historical time-series environmental data alongside contemporary measurements, computing metrics over user-specified windows via the days_bf argument and including example datasets.

Topics

Details

Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
11/7/2023
Last Updated:
11/7/2023

Operations

Data Inputs & Outputs

Publications

Wu N, Guo K, Zou Y, He F, Riis T. <scp>SER</scp>: An R package to characterize environmental regimes. Ecology and Evolution. 2023;13(3). doi:10.1002/ece3.9882. PMID:36919015. PMCID:PMC10008288.

PMID: 36919015
Funding: - National Natural Science Foundation of China: 52279068