SER
SER estimates short-period environmental regimes from time-series environmental and biotic data to characterize temporal patterns such as the frequency of mean and extreme events and rates of change.
Key Features:
- Versatility Across Variables: Supports environmental and biotic variables including nutrient concentration, light levels, and dissolved oxygen as inputs for regime estimation.
- Customizable Time Frames: Computes environmental-regime metrics over user-specified intervals (via the days_bf argument), allowing windows that range from days to years.
- Enhanced Ecological Insights: Incorporation of environmental-regime metrics can increase explained variation in temporal β-diversity and its components.
Scientific Applications:
- Ecological Studies: Analyzes temporal environmental dynamics to elucidate relationships with community metrics such as species diversity, distribution, and temporal β-diversity.
- Interdisciplinary Research: Applies temporal-regime analysis to other domains such as social science, socioeconomics, and epidemiology to study the effects of historical dynamics on target variables.
Methodology:
Applies a statistical framework to estimate environmental regimes by analyzing historical time-series environmental data alongside contemporary measurements, computing metrics over user-specified windows via the days_bf argument and including example datasets.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 11/7/2023
- Last Updated:
- 11/7/2023
Operations
Data Inputs & Outputs
Statistical inference
Publications
Wu N, Guo K, Zou Y, He F, Riis T. <scp>SER</scp>: An R package to characterize environmental regimes. Ecology and Evolution. 2023;13(3). doi:10.1002/ece3.9882. PMID:36919015. PMCID:PMC10008288.
DOI: 10.1002/ECE3.9882
PMID: 36919015
PMCID: PMC10008288
Funding: - National Natural Science Foundation of China: 52279068