SGD-Net

SGD-Net performs segmentation, classification, and atlas-based mapping of acute ischemic stroke (AIS) lesions from diffusion-weighted imaging (DWI) to quantify lesion characteristics and spatial distribution.


Key Features:

  • U-Shape Model Architecture: Employs a U-shaped model architecture for semantic segmentation of AIS lesions in DWI, achieving Dice coefficients of 0.806–0.828 and Intersection over Union (IoU) values of 0.675–0.707.
  • Binary Classification: Performs binary classification to distinguish lacunar versus non-lacunar lesions and to identify anterior versus posterior circulatory territory.
  • SGD-Net Plus Enhancement: SGD-Net Plus incorporates automated segmentation and registration to align DWI lesions with T1-weighted images and brain atlases for region-wise mapping.
  • Performance Metrics: A two-stage deep learning framework outperforms one-stage models, with lesion size classification accuracies of 0.867–0.956, AUROC 0.962–0.992, AUPRC 0.964–0.994, and lesion location classification accuracies of 0.860–0.930, AUROC 0.936–0.988, AUPRC 0.883–0.978.
  • Quantitative Mapping: Reports lesion volume, region percentage, and lesion occupancy within selected brain regions including white matter tracts, Brodmann areas, and cytoarchitectonic areas.

Scientific Applications:

  • Lesion segmentation and quantification: Produces pixel-wise segmentations and quantitative metrics for assessment of AIS lesion burden from DWI.
  • Lesion classification and localization: Classifies lesion type (lacunar/non-lacunar) and determines anterior versus posterior circulation location to inform diagnostic stratification.
  • Atlas-based regional analysis and research: Maps lesions to T1-weighted images and brain atlases to quantify regional lesion distribution across white matter tracts, Brodmann areas, and cytoarchitectonic areas for clinical research.

Methodology:

Uses a two-stage deep learning framework with a U-shaped semantic segmentation model followed by classification, and SGD-Net Plus adds automated registration of DWI lesion masks to T1-weighted images and brain atlases.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
8/17/2022
Last Updated:
8/17/2022

Operations

Publications

Wei Y, Huang W, Jian C, Hsu CH, Hsu C, Lin C, Cheng C, Chen Y, Wei H, Chen K. Semantic segmentation guided detector for segmentation, classification, and lesion mapping of acute ischemic stroke in MRI images. NeuroImage: Clinical. 2022;35:103044. doi:10.1016/j.nicl.2022.103044. PMID:35597030. PMCID:PMC9123273.

PMID: 35597030
PMCID: PMC9123273
Funding: - Ministry of Science and Technology, Taiwan: 109-2314-B-182-036 - Chang Gung Memorial Hospital: CMRPG2H0312, CMRPG2H0323, CMRPG2J0121, CMRPG2K0211, CMRPG2K0241