shic

shic is a collection of shims for use in automated workflow composition

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Details

License:: MIT
Cost:: Free of charge
Tool Type:: command-line tool
Added:: 8/30/2023
Last Updated:: 1/16/2025

Operations

Data Inputs & Outputs

Conversion

Inputs

Mass spectrometry data
- MGF

Outputs

Mass spectrometry data
- MGF

Conversion

Inputs

Peptide identification
- TSV

Outputs

Peptide identification
- mzIdentML

Conversion

Inputs

Peptide identification
- mzIdentML

Outputs

Protein sequence
- TSV

Conversion

Inputs

Peptide identification
- pepXML

Outputs

Protein name
- Textual format

Conversion

Inputs

Peptide identification
- pepXML

Outputs

Protein name (UniProt)
- Textual format

Conversion

Inputs

Peptide identification
- pepXML

Outputs

Protein sequence
- TSV

Conversion

Inputs

Protein report
- TSV

Outputs

ID list
- TSV

Conversion

Inputs

Protein report
- protXML

Outputs

ID list
- TSV

Conversion

Inputs

Protein sequence
- FASTA

Outputs

UniProt accession
- TSV

Conversion

Inputs

Sequence distance matrix
- Nexus format

Outputs

Sequence distance matrix
- mega

Conversion

Inputs

Text mining report
- XML

Outputs

ChEBI ID
- TSV

Documentation

General

https://github.com/magnuspalmblad/shic/README.md

Links

Repository

https://github.com/magnuspalmblad/shic

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