Shimming Toolbox
Shimming Toolbox implements advanced B0 and B1 magnetic resonance imaging shimming methods and supports prototyping of static, dynamic, and real-time shimming experiments.
Key Features:
- Versatile Shimming Capabilities: Supports both B0 and B1 shimming across applications including brain and spinal cord experiments.
- Static, Dynamic, and Real-Time Shimming: Implements static shimming, dynamic shimming, and real-time dynamic xyz-shimming modes.
- Field Mapping Techniques: Incorporates multiple field mapping techniques to quantify B0 and B1 inhomogeneities and guide shim calculations.
- Automated Masking Options: Provides manual and automatic masking for anatomical regions such as the brain and spinal cord to constrain shimming computations.
- Prototyping and Method Development: Enables prototyping of new shimming methods and algorithms.
- Modular Integration with MRI Systems: Modular design enables integration with various MRI systems and custom coil setups such as AC/DC coils.
Scientific Applications:
- B0 Dynamic Shimming at 7T: Using custom AC/DC coils, achieved a 47% reduction in the standard deviation of the B0 field within approximately 10 minutes and reduced geometric distortions in Echo Planar Imaging (EPI) images.
- B0 Real-Time Shimming at 3T (spinal cord): Real-time dynamic xyz-shimming on the spinal cord produced a 30% reduction in signal distribution standard deviation over approximately 5 minutes.
- B1 Static Shimming at 7T (spinal cord): Static B1 shimming on the spinal cord at 7T resulted in a 40% decrease in the coefficient of variation of the B1 field within approximately 10 minutes.
Methodology:
Implements static and dynamic shimming including real-time dynamic xyz-shimming; uses multiple field mapping techniques; provides manual and automatic masking for brain and spinal cord; integrates with custom AC/DC coil setups.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 1/25/2023
- Last Updated:
- 11/24/2024
Operations
Publications
D'Astous A, Cereza G, Papp D, Gilbert KM, Stockmann JP, Alonso‐Ortiz E, Cohen‐Adad J. Shimming toolbox: An open‐source software toolbox for <scp>B0</scp> and <scp>B1</scp> shimming in MRI. Magnetic Resonance in Medicine. 2022;89(4):1401-1417. doi:10.1002/mrm.29528. PMID:36441743. PMCID:PMC9910837.
DOI: 10.1002/mrm.29528
PMID: 36441743
PMCID: PMC9910837
Funding: - Canada Foundation for Innovation: 32454, 34824
- Canada Research Chairs: 950‐230815
- Canadian Institutes of Health Research: CIHR FDN‐143263
- National Institute of Biomedical Imaging and Bioengineering: U24 EB028984
- Natural Sciences and Engineering Research Council of Canada: RGPIN‐2019‐07244
- Canada First Research Excellence Fund: 35450, 5886