shinyExprPortal

shinyExprPortal provides configurable shiny-based web portals to present and explore molecular expression data (transcriptomic and proteomic) and associated phenotypic information for dissemination and analysis.

Key Features:

• Shiny-based portal framework: Implements configurable portals using the 'shiny' framework to present analyses and visualizations.
• Supported data types: Supports transcriptomic and proteomic expression data together with associated phenotypic information.
• Analytical presentations: Presents differential expression analysis, co-expression studies, and pathway analysis.
• Interactive visualizations: Provides dynamic visualizations for exploration of complex datasets and presentation of publication-quality plots.
• Workflow integration: Integrates with existing bioinformatics workflows to load and present analysis results and plots.

Scientific Applications:

• Result dissemination: Dissemination of comprehensive omics analysis results through web-accessible portals that extend beyond static figures.
• Exploratory data analysis: Interactive exploration and interrogation of transcriptomic and proteomic datasets alongside phenotypic metadata.
• Reproducibility and collaboration: Centralized presentation of analyses and plots to support reproducibility and collaborative review of omics studies.

Methodology:

Uses the 'shiny' framework to construct configurable web applications that display differential expression, co-expression, and pathway analysis results and interactive visualizations of transcriptomic and proteomic expression data with associated phenotypic information.