SHOREmap

Extension of the short read analysis pipeline SHORE. SHOREmap supports genome-wide genotyping and candidate-gene sequencing in a single step through analysis of deep sequencing data from a large pool of recombinants.

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Topics

Genomics Genotype and phenotype Mapping

Details

License:: GPL-3.0
Maturity:: Mature
Tool Type:: workflow
Operating Systems:: Linux, Windows, Mac
Programming Languages:: R, Perl
Added:: 1/13/2017
Last Updated:: 11/25/2024

Operations

DNA mapping

Publications

Schneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, Jørgensen J, Weigel D, Andersen SU. SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods. 2009;6(8):550-551. doi:10.1038/nmeth0809-550. PMID:19644454.

DOI: 10.1038/nmeth0809-550

PMID: 19644454

Documentation

General

http://1001genomes.org/software/shoremap.html

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