showserver

showserver displays configuration details for servers within the EMBOSS suite, providing visibility into server parameters used for sequence analysis, database management, and other bioinformatics workflows.


Key Features:

  • Server Information Display: Displays configuration details for servers configured within the EMBOSS environment, including server parameters and settings used to maintain and troubleshoot bioinformatics workflows.
  • Integration with EMBOSS: Exposes and reports server configuration relevant to EMBOSS command-line applications and the suite's over 200 applications.
  • Configuration Management: Provides a mechanism to view and verify server settings to support configuration and maintenance of EMBOSS installations.
  • Database Configuration Reference: Supports viewing and referencing settings used to set up and manage databases under EMBOSS for storing and retrieving biological data.

Scientific Applications:

  • Sequence analysis: Ensures server parameters are visible and verifiable for computational tasks involved in sequence analysis.
  • Database management: Supports correct configuration and verification of databases used to store and retrieve biological data within EMBOSS workflows.
  • Tool development and maintenance: Facilitates verification of server environments required for developing, deploying, and maintaining EMBOSS applications and large-scale molecular biology analyses.

Methodology:

Provides mechanisms to view and verify server settings and to reference and manage database configuration parameters within the EMBOSS environment.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

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