showserver
showserver displays configuration details for servers within the EMBOSS suite, providing visibility into server parameters used for sequence analysis, database management, and other bioinformatics workflows.
Key Features:
- Server Information Display: Displays configuration details for servers configured within the EMBOSS environment, including server parameters and settings used to maintain and troubleshoot bioinformatics workflows.
- Integration with EMBOSS: Exposes and reports server configuration relevant to EMBOSS command-line applications and the suite's over 200 applications.
- Configuration Management: Provides a mechanism to view and verify server settings to support configuration and maintenance of EMBOSS installations.
- Database Configuration Reference: Supports viewing and referencing settings used to set up and manage databases under EMBOSS for storing and retrieving biological data.
Scientific Applications:
- Sequence analysis: Ensures server parameters are visible and verifiable for computational tasks involved in sequence analysis.
- Database management: Supports correct configuration and verification of databases used to store and retrieve biological data within EMBOSS workflows.
- Tool development and maintenance: Facilitates verification of server environments required for developing, deploying, and maintaining EMBOSS applications and large-scale molecular biology analyses.
Methodology:
Provides mechanisms to view and verify server settings and to reference and manage database configuration parameters within the EMBOSS environment.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.