SigReannot-mart

SigReannot-mart re-annotates oligonucleotide probe sets used in expression microarrays to provide up-to-date genomic and transcriptomic annotations for transcriptome studies.

Key Features:

• Regularly Updated Annotations: Provides regularly updated genomic and transcriptomic annotations for oligonucleotide probe sets.
• Comparative Analysis: Enables comparison of probe sets based on annotation criteria to assess differences among sets.
• Probe Set Customization: Supports mixing existing oligo probe sets to produce tailored probe collections.
• SigReannot Pipeline Integration: Stores and exposes results produced by the SigReannot annotation pipeline.

Scientific Applications:

• Microarray probe re-annotation: Updates probe-to-gene and probe-to-transcript mappings for expression microarrays.
• Genomic studies in farm and aquaculture species: Provides updated annotations to support transcriptome research in farm and aquaculture species.

Methodology:

Stores results from the SigReannot pipeline, which processes oligonucleotide probe sets and updates annotations based on newly available genomic and transcriptomic data.