SIMPA
SIMPA simulates light and sound interactions in biological tissues to generate realistic optical and acoustic images for developing and validating imaging forward models and data-driven methods.
Key Features:
- Modular Design: A modular architecture allows interchangeable module implementations and abstraction from concrete forward model implementations.
- Comprehensive Libraries: Includes libraries of biological structures (e.g., vessels) with associated optical and acoustic properties for constructing realistic tissue models.
- Simulation Pipeline Customization: Customizable pipelines integrate computational forward models, data processing algorithms, and digital device twins to produce end-to-end simulations.
- Data-Driven Approaches Support: Produces high-quality simulations across a range of wavelengths to support development and training of data-driven biomedical imaging methods.
Scientific Applications:
- Optical and Acoustic Imaging Research: Enables simulation-based studies across optical and acoustic imaging modalities to investigate imaging system behavior.
- Photoacoustic Imaging: Supports simulation and evaluation of photoacoustic imaging setups and forward models.
- Inverse Problem Development and Validation: Provides realistic simulated ground truth for development and validation of inverse problem algorithms.
- Tissue Property Studies: Facilitates exploration of how tissue optical and acoustic properties affect image formation.
Methodology:
Computational forward models simulate light and sound interactions with biological tissues within a modular pipeline; simulation outputs are processed by data processing algorithms and digital device twins to generate images.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 7/25/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Gröhl J, Dreher KK, Schellenberg M, Rix T, Holzwarth N, Vieten P, Ayala L, Bohndiek SE, Seitel A, Maier-Hein L. SIMPA: an open-source toolkit for simulation and image processing for photonics and acoustics. Journal of Biomedical Optics. 2022;27(08). doi:10.1117/1.jbo.27.8.083010. PMID:35380031. PMCID:PMC8978263.