SIMPA

SIMPA simulates light and sound interactions in biological tissues to generate realistic optical and acoustic images for developing and validating imaging forward models and data-driven methods.


Key Features:

  • Modular Design: A modular architecture allows interchangeable module implementations and abstraction from concrete forward model implementations.
  • Comprehensive Libraries: Includes libraries of biological structures (e.g., vessels) with associated optical and acoustic properties for constructing realistic tissue models.
  • Simulation Pipeline Customization: Customizable pipelines integrate computational forward models, data processing algorithms, and digital device twins to produce end-to-end simulations.
  • Data-Driven Approaches Support: Produces high-quality simulations across a range of wavelengths to support development and training of data-driven biomedical imaging methods.

Scientific Applications:

  • Optical and Acoustic Imaging Research: Enables simulation-based studies across optical and acoustic imaging modalities to investigate imaging system behavior.
  • Photoacoustic Imaging: Supports simulation and evaluation of photoacoustic imaging setups and forward models.
  • Inverse Problem Development and Validation: Provides realistic simulated ground truth for development and validation of inverse problem algorithms.
  • Tissue Property Studies: Facilitates exploration of how tissue optical and acoustic properties affect image formation.

Methodology:

Computational forward models simulate light and sound interactions with biological tissues within a modular pipeline; simulation outputs are processed by data processing algorithms and digital device twins to generate images.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
7/25/2022
Last Updated:
11/24/2024

Operations

Publications

Gröhl J, Dreher KK, Schellenberg M, Rix T, Holzwarth N, Vieten P, Ayala L, Bohndiek SE, Seitel A, Maier-Hein L. SIMPA: an open-source toolkit for simulation and image processing for photonics and acoustics. Journal of Biomedical Optics. 2022;27(08). doi:10.1117/1.jbo.27.8.083010. PMID:35380031. PMCID:PMC8978263.

PMID: 35380031
PMCID: PMC8978263
Funding: - European Research Council: 101002198, ERC-2015-StG-37960

Documentation

Links