sincei

sincei explores single-cell epigenomic data directly from aligned reads stored in .bam files.

Key Features:

• Command-line interface: sincei provides a command-line toolkit for data exploration.
• Direct .bam file processing: sincei analyzes aligned reads stored in .bam files without requiring intermediate formats.
• Multi-protocol compatibility: sincei supports data from a wide range of single-cell (epi)genomics protocols.
• Flexible quality control: sincei enables quality control and data exploration for single-cell epigenomic assays.

Scientific Applications:

• Single-cell epigenomics analysis: sincei facilitates the study of multiple layers of epigenetic regulation while resolving tissue heterogeneity.
• Single-cell genomics data exploration: sincei enables exploration of data from single-cell genomics protocols.

Methodology:

sincei processes aligned reads from .bam files for exploration of single-cell (epi)genomic data.