SinGAN-Seg
SinGAN-Seg generates synthetic medical images and corresponding segmentation masks from a single annotated image to augment datasets for medical image segmentation and mitigate data scarcity and privacy constraints.
Key Features:
- Single-Image Training: Trains using only one image and its corresponding ground-truth mask, reducing dependency on large annotated datasets.
- Synthetic Data Generation: Produces synthetic medical images together with segmentation masks that can substitute for real data when sharing is restricted.
- Style Transfer Technique: Applies style transfer to enhance the realism and diagnostic appearance of generated images.
- Performance Evaluation: Assesses outputs using qualitative and quantitative comparisons between real and synthetic datasets to benchmark generation quality.
- Model Training Enhancement: Combines synthetic and real data to train segmentation models such as UNet++, enabling performance comparable to training on larger real datasets.
Scientific Applications:
- Segmentation model augmentation: Augments training data for medical image segmentation tasks to improve model robustness under limited-data conditions.
- Rare abnormality representation: Generates examples of scarce or hard-to-obtain abnormalities to support training and evaluation of segmentation algorithms.
- Oncology, radiology, and pathology: Supplies synthetic annotated images for segmentation tasks across oncology, radiology, and pathology imaging studies.
Methodology:
Train on a single image and its ground-truth mask to generate synthetic images and corresponding masks, apply a style transfer technique to increase realism, and evaluate outputs via qualitative and quantitative comparisons and downstream segmentation performance (e.g., UNet++ trained with combined real and synthetic data).
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool, library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 8/17/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Thambawita V, Salehi P, Sheshkal SA, Hicks SA, Hammer HL, Parasa S, Lange Td, Halvorsen P, Riegler MA. SinGAN-Seg: Synthetic training data generation for medical image segmentation. PLOS ONE. 2022;17(5):e0267976. doi:10.1371/journal.pone.0267976. PMID:35500005. PMCID:PMC9060378.