SkinSensDB
SkinSensDB provides a curated database integrating in vivo and in vitro assay data to support prediction and assessment of chemical skin sensitizers within the Adverse Outcome Pathway (AOP) framework.
Key Features:
- Curated dataset: Compiles and curates data from published AOP-related assays for skin sensitization.
- In vivo and in vitro integration: Integrates traditional rodent in vivo data and alternative in vitro assay data aligned with the AOP framework.
- AOP alignment: Represents and integrates multiple key events within the adverse outcome pathway for skin sensitization.
- AOP-based predictive model support: Provides datasets intended for building and refining computational AOP-based predictive models.
- Structural similarity comparisons: Enables evaluation of new compounds by comparison with structurally similar compounds in the database.
- Toxicological endpoint focus: Centers on chemical skin sensitization as a toxicological endpoint for hazard determination and safety evaluation.
Scientific Applications:
- Skin sensitization prediction: Use curated in vivo and in vitro data to predict the skin sensitization potential of chemicals.
- Model development and validation: Support building, training, and validating AOP-based computational models for skin sensitization.
- Toxicological hazard assessment: Inform chemical hazard determination and safety evaluation for regulatory and research purposes.
- Interpretation of alternative assays: Integrate and interpret in vitro assays aligned with the AOP to complement or replace traditional animal data.
Methodology:
Compilation and curation of published AOP-related in vivo (rodent) and in vitro assay data, integration of these datasets for AOP-based predictive modeling, and structural similarity comparisons for compound evaluation.
Topics
Details
- Tool Type:
- web application
- Added:
- 9/1/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Wang C, Lin Y, Wang S, Shih C, Lin Y, Tung C. SkinSensDB: a curated database for skin sensitization assays. Journal of Cheminformatics. 2017;9(1). doi:10.1186/s13321-017-0194-2. PMID:28194231. PMCID:PMC5285290.
PMID: 28194231
PMCID: PMC5285290
Funding: - National Health Research Institutes of Taiwan: NHRI-105A1-PDCO-0316164
- Ministry of Science and Technology, Taiwan: MOST104-2221-E-037-001-MY3, MOST104-2320-B-037-032-MY2
- Kaohsiung Medical University Research Foundation: KMU-M105005
- NSYSU-KMU Joint Research Project: NSYSUKMU105-I007
- Research Center for Environmental Medicine: KMU-TP104A25