SNPrank

Eigenvector centrality algorithm that ranks the importance of single nucleotide polymorphisms (SNPs) in a genetic association interaction network (GAIN).

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Topics

SNP Interactions Genetics

Details

Tool Type:: command-line tool
Operating Systems:: Linux, Windows, Mac
Programming Languages:: Java, MATLAB, Python
Added:: 12/18/2017
Last Updated:: 12/10/2018

Operations

Network analysis

Publications

Schrauwen I, Venken K, Vanderstraeten K, Thys M, Hendrickx J, Fransen E, Van Laer L, Govaerts PJ, Verstreken M, Schatteman I, Stinissen P, Hellings N, Van Camp G. Involvement of T-cell receptor-β alterations in the development of otosclerosis linked to OTSC2. Genes & Immunity. 2010;11(3):246-253. doi:10.1038/gene.2010.3.

DOI: 10.1038/gene.2010.3

Documentation

General

http://insilico.utulsa.edu/index.php/gainsnprank-analysis-pipeline/

Links

Software catalogue

http://www.mybiosoftware.com/snprank-0-1-0-network-analysis-tool-for-gwas.html

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