solid_qual_boxplot
solid_qual_boxplot generates boxplot visualizations of quality score distributions from DNA sequencing libraries to assess sequencing data quality for next-generation sequencing (NGS) analyses.
Key Features:
- Boxplot Visualization: Generates boxplots that represent the spread and central tendency of quality scores across sequencing reads.
- Quality Assessment: Visualizes quality score distributions to identify outliers and trends indicative of issues in sequencing runs or library preparation.
Scientific Applications:
- NGS Data Analysis: Assesses quality metrics in high-throughput DNA sequencing datasets to inform downstream analyses such as variant calling and gene expression profiling.
- Data Quality Monitoring: Facilitates monitoring of sequencing data quality by providing graphical summaries of quality-score variability.
Methodology:
Generates boxplot graphs of sequencing quality score distributions to represent the distribution and variability of quality metrics.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.