solid_qual_boxplot

solid_qual_boxplot generates boxplot visualizations of quality score distributions from DNA sequencing libraries to assess sequencing data quality for next-generation sequencing (NGS) analyses.


Key Features:

  • Boxplot Visualization: Generates boxplots that represent the spread and central tendency of quality scores across sequencing reads.
  • Quality Assessment: Visualizes quality score distributions to identify outliers and trends indicative of issues in sequencing runs or library preparation.

Scientific Applications:

  • NGS Data Analysis: Assesses quality metrics in high-throughput DNA sequencing datasets to inform downstream analyses such as variant calling and gene expression profiling.
  • Data Quality Monitoring: Facilitates monitoring of sequencing data quality by providing graphical summaries of quality-score variability.

Methodology:

Generates boxplot graphs of sequencing quality score distributions to represent the distribution and variability of quality metrics.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Validation

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links