solid_qual_boxplot
solid_qual_boxplot generates boxplot visualizations of quality score distributions from DNA sequencing libraries to assess sequencing data quality for next-generation sequencing (NGS) analyses.
Key Features:
- Boxplot Visualization: Generates boxplots that represent the spread and central tendency of quality scores across sequencing reads.
- Quality Assessment: Visualizes quality score distributions to identify outliers and trends indicative of issues in sequencing runs or library preparation.
Scientific Applications:
- NGS Data Analysis: Assesses quality metrics in high-throughput DNA sequencing datasets to inform downstream analyses such as variant calling and gene expression profiling.
- Data Quality Monitoring: Facilitates monitoring of sequencing data quality by providing graphical summaries of quality-score variability.
Methodology:
Generates boxplot graphs of sequencing quality score distributions to represent the distribution and variability of quality metrics.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Validation
Inputs
Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.