SongExplorer
SongExplorer segments animal acoustic communication signals, including airborne sounds and substrate-borne vibrations, using deep learning to support discovery, annotation, training, and automated segmentation for bioacoustic research.
Key Features:
- Discovery from raw data: Facilitates identification of song events and novel acoustic types from raw recordings.
- Manual annotation: Supports manual labeling of song events to provide ground truth for model training.
- Supervised training (deep CNN): Employs a deep convolutional neural network trained on annotated data to learn song-event classes.
- Automated segmentation: Uses the trained model to segment recordings into distinct acoustic events automatically.
- Audio–video synchronization: Enables correlation of acoustic events with synchronized video to link sounds to visual behaviors.
- Low-dimensional visualization: Provides low-dimensional embeddings to visualize large numbers of song events and detect mislabeled examples.
- Performance and accuracy: Demonstrates higher accuracy than heuristic algorithms and achieves segmentation accuracy comparable to two expert human annotators.
Scientific Applications:
- Novel song-type discovery: Enables rapid detection of novel song types within new or previously studied species.
- Behavioral analysis: Supports linking acoustic signals to visual behaviors for studies of communication and courtship.
- Biodiversity and ecological monitoring: Facilitates detection and quantification of species-specific acoustic signatures for monitoring.
- Evolution and conservation studies: Provides segmented, labeled acoustic data for investigations of signal evolution and conservation assessments.
Methodology:
Manual annotation of song events; supervised training of a deep convolutional neural network on annotated data; automated segmentation using the trained CNN; generation of low-dimensional visualizations of song-event embeddings; synchronization of audio with video for cross-modal correlation.
Topics
Details
- License:
- BSD-3-Clause
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, Shell
- Added:
- 12/6/2021
- Last Updated:
- 12/6/2021
Operations
Publications
Arthur BJ, Ding Y, Sosale M, Khalif F, Kim E, Waddell P, Turaga SC, Stern DL. <i>SongExplorer</i>: A deep learning workflow for discovery and segmentation of animal acoustic communication signals. Unknown Journal. 2021. doi:10.1101/2021.03.26.437280.