SongExplorer

SongExplorer segments animal acoustic communication signals, including airborne sounds and substrate-borne vibrations, using deep learning to support discovery, annotation, training, and automated segmentation for bioacoustic research.


Key Features:

  • Discovery from raw data: Facilitates identification of song events and novel acoustic types from raw recordings.
  • Manual annotation: Supports manual labeling of song events to provide ground truth for model training.
  • Supervised training (deep CNN): Employs a deep convolutional neural network trained on annotated data to learn song-event classes.
  • Automated segmentation: Uses the trained model to segment recordings into distinct acoustic events automatically.
  • Audio–video synchronization: Enables correlation of acoustic events with synchronized video to link sounds to visual behaviors.
  • Low-dimensional visualization: Provides low-dimensional embeddings to visualize large numbers of song events and detect mislabeled examples.
  • Performance and accuracy: Demonstrates higher accuracy than heuristic algorithms and achieves segmentation accuracy comparable to two expert human annotators.

Scientific Applications:

  • Novel song-type discovery: Enables rapid detection of novel song types within new or previously studied species.
  • Behavioral analysis: Supports linking acoustic signals to visual behaviors for studies of communication and courtship.
  • Biodiversity and ecological monitoring: Facilitates detection and quantification of species-specific acoustic signatures for monitoring.
  • Evolution and conservation studies: Provides segmented, labeled acoustic data for investigations of signal evolution and conservation assessments.

Methodology:

Manual annotation of song events; supervised training of a deep convolutional neural network on annotated data; automated segmentation using the trained CNN; generation of low-dimensional visualizations of song-event embeddings; synchronization of audio with video for cross-modal correlation.

Topics

Details

License:
BSD-3-Clause
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python, Shell
Added:
12/6/2021
Last Updated:
12/6/2021

Operations

Publications

Arthur BJ, Ding Y, Sosale M, Khalif F, Kim E, Waddell P, Turaga SC, Stern DL. <i>SongExplorer</i>: A deep learning workflow for discovery and segmentation of animal acoustic communication signals. Unknown Journal. 2021. doi:10.1101/2021.03.26.437280.

Links